After uploading and cleaning your data, you can begin to fit metabolism models. This is done via the StreamPULSE R package, which calls the modeling engine (streamMetabolizer). The R package provides tools for downloading data from the StreamPULSE server, formatting, filtering, and gap-filling it, and then passing it on to streamMetabolizer.
Here are some things to consider before modeling metabolism.
Below is code for fitting metabolism models with streamMetabolizer.
Copy and paste into R and test it out. You can get more information on the modeling code here. Note that you'll need to use your unique user token to access your embargoed data via request_data. All new site data are embargoed for 1 year automatically. To lengthen or shorten this embargo period, or to get your user token, contact Mike Vlah.
